Publications

This publication list is also available on PubMed

  1. RNA Fluorescence with Light-Up Aptamers.
    Ouellet J.
    Frontiers in Chemistry. 2016 June 28;4:29. doi: 10.3389/fchem.2016.00029. PMID: 27446908

  2. Automated design of hammerhead ribozymes and validation by targeting the PABPN1 gene transcript.
    Kharma N, Varin L, Abu-Baker A, Ouellet J, Najeh S, Ehdaeivand MR, Belmonte G, Ambri A, Rouleau G, Perreault J.
    Nucleic Acids Res. 2016 Feb 29;44(4).  doi: 10.1093/nar/gkv1111. [Epub ahead of print]. PMID: 26527730

  3. Finding instances of riboswitches and ribozymes by homology search of structured RNA with Infernal.
    El Korbi A, Ouellet J, Naghdi MR, Perreault J.
    Methods in molecular biology (Clifton, N.J.). 2014; 1103:113-26. PMID: 24318890

  4. Structural Analysis of Ribozymes.
    Ouellet J, Ananvoranich S, Perreault J.
    Encyclopedia of Analytical Chemistry (John Wiley & Sons, Ltd). 2014; p.1-18.

  5. Single-molecule observation of the induction of k-turn RNA structure on binding L7Ae protein.
    Wang J, Fessl T, Schroeder KT, Ouellet J, Liu Y, Freeman AD, Lilley DM.
    Biophysical journal. 2012; 103(12):2541-8. PMID: 23260056

  6. Orientation of cyanine fluorophores terminally attached to DNA via long, flexible tethers.
    Ouellet J, Schorr S, Iqbal A, Wilson TJ, Lilley DM.
    Biophysical journal. 2011; 101(5):1148-54. PMID: 21889452

  7. A structural database for k-turn motifs in RNA.
    Schroeder KT, McPhee SA, Ouellet J, Lilley DM.
    RNA (New York, N.Y.). 2010; 16(8):1463-8. PMID: 20562215

  8. Structure of the three-way helical junction of the hepatitis C virus IRES element.
    Ouellet J, Melcher S, Iqbal A, Ding Y, Lilley DM.
    RNA (New York, N.Y.). 2010; 16(8):1597-609. PMID: 20581129

  9. Formation of an active site in trans by interaction of two complete Varkud Satellite ribozymes.
    Ouellet J, Byrne M, Lilley DM.
    RNA (New York, N.Y.). 2009; 15(10):1822-6. PMID: 19703941

  10. The complete VS ribozyme in solution studied by small-angle X-ray scattering.
    Lipfert J, Ouellet J, Norman DG, Doniach S, Lilley DM.
    Structure (London, England : 1993). 2008; 16(9):1357-67. PMID: 18786398
    Evaluated Article in F1000

  11. Examination of the folding pathway of the antigenomic hepatitis delta virus ribozyme reveals key interactions of the L3 loop.
    Reymond C, Ouellet J, Bisaillon M, Perreault JP.
    RNA (New York, N.Y.). 2007; 13(1):44-54. PMID: 17105991

  12. Nucleobase catalysis in the hairpin ribozyme.
    Wilson TJ, Ouellet J, Zhao ZY, Harusawa S, Araki L, Kurihara T, Lilley DM.
    RNA (New York, N.Y.). 2006; 12(6):980-7. PMID: 16601203

  13. Cross-linking experiments reveal the presence of novel structural features between a hepatitis delta virus ribozyme and its substrate.
    Ouellet J, Perreault JP.
    RNA (New York, N.Y.). 2004; 10(7):1059-72. PMID: 15208442

  14. Ribozyme-based gene-inactivation systems require a fine comprehension of their substrate specificities; the case of delta ribozyme.
    Bergeron LJ, Ouellet J, Perreault JP.
    Current medicinal chemistry. 2003; 10(23):2589-97. PMID: 14529473

  15. Formation of the P1.1 pseudoknot is critical for both the cleavage activity and substrate specificity of an antigenomic trans-acting hepatitis delta ribozyme.
    Deschênes P, Ouellet J, Perreault J, Perreault JP.
    Nucleic acids research. 2003; 31(8):2087-96. PMID: 12682359

  16. Kinetic analysis of bimolecular hepatitis delta ribozyme.
    Ananvoranich S, Fiola K, Ouellet J, Deschênes P, Perreault JP.
    Methods in enzymology. 2001; 341:553-66. PMID: 11582804

  17. Sequencing of peach latent mosaic viroid variants from nine North American peach cultivars shows that this RNA folds into a complex secondary structure.
    Pelchat M, Lévesque D, Ouellet J, Laurendeau S, Lévesque S, Lehoux J, Thompson DA, Eastwell KC, Skrzeczkowski LJ, Perreault JP.
    Virology. 2000; 271(1):37-45. PMID: 10814568

  18. Mapping in solution shows the peach latent mosaic viroid to possess a new pseudoknot in a complex, branched secondary structure.
    Bussière F, Ouellet J, Côté F, Lévesque D, Perreault JP.
    Journal of virology. 2000; 74(6):2647-54. PMID: 10684279