Sankaranaraynan R, Sekhon PK, Ambat A , Nelson J, Maji A, Jose D, Bhat J, Scaria J (2021) Screening of human gut bacterial culture collection identifies species capable of biotransformation of flavonoid quercetin into metabolites with anticancer properties. Int J Mol Sci. 22(13):7045. doi: 10.3390/ijms22137045. PMID: 34208885
Camel B, Jose D* Dang A, Meze K, von Hippel PH (2021) Mapping Interactions of Single-Stranded (SS) DNA with the SS-DNA Binding Protein (GP32) of the T4 DNA Replication Complex at Specific Nucleotide Residue Positions. Nucleic Acids Research. 49(2): 25 916 927 (co-corresponding author)
Guillen D, Schievelbein M, Patel K, Jose D, Ouellet J (2020) A simple and affordable kinetic assay of nucleic acids with SYBR Gold gel staining. PLoS ONE. 2020 March 3; 15(3): e0229527
Phelps C, Israels B, Jose D, Lee W, von Hippel PH, Marcus AH (2017) Dynamic Interactions between DNA and the T4 Single-Stranded Binding Protein gp32: Multi-Dimensional Correlation Analysis of Microsecond Single-Molecule FRET and Linear Dichroism Fluctuations. Proc Natl Acad Sci U S A 114(18): E612-621. PMID: 28416680
Lee W, Gillies JP, Jose D, von Hippel PH, Marcus AH (2016) Single-molecule FRET studies of the cooperative and non-cooperative binding kinetics of the bacteriophage T4 single-stranded DNA binding protein (gp32) to ssDNA lattices at replication fork junctions. Nucleic Acids Research 44(22): 10691-710. PMID: 27694621
Jose D, Weitzel SE, Baase WA, Michael MM, von Hippel PH (2015) Mapping the interactions of the single-stranded DNA binding protein of bacteriophage T4 (gp32) with DNA lattices at single nucleotide resolution: gp32 polynucleotide binding and cooperativity. Nucleic Acids Research 43(19): 9291-305. PMID: 26275774
Jose D, Weitzel SE, Baase WA, von Hippel PH (2015) Mapping the interactions of the single-stranded DNA binding protein of bacteriophage T4 (gp32) with DNA lattices at single nucleotide resolution: gp32 monomer binding. Nucleic Acids Research 43(19): 9276-90. PMID: 26275775
Zhao H et al., (2015) A Multi laboratory Comparison of Calibration Accuracy and the Performance of External References in Analytical Ultracentrifugation. PLoS ONE. 2015 May 21; 10(5): e0126420. PMID: 25997164
Phelps C, Lee W, Jose D, von Hippel PH, Marcus AH (2013) Single-molecule FRET and linear dichroism studies of DNA breathing and helicase binding at replication fork junctions. Proc Natl Acad Sci U S A. 110(43): 17320-5. PMID: 24062430
Lee W, Jose D, Phelps C, Marcus AH, von Hippel PH (2013) A single-molecule view of the assembly pathway, subunit stoichiometry and unwinding activity of the bacteriophage T4 primosome (helicase-primase) complex. Biochemistry 52(18): 3157-70. PMID: 23578280
Jose D, Weitzel SE, von Hippel PH (2012) Breathing fluctuations in position-specific DNA base pairs are involved in regulating helicase movement into the replication fork. Proc Natl Acad Sci U S A 109(36): 14428-14433. PMID: 22908246
Jose D, Weitzel SE, Jing D, von Hippel PH (2012) Assembly and subunit stoichiometry of the functional helicase-primase (primosome) complex of bacteriophage T4. Proc Natl Acad Sci U S A 109(34): 13596-13601. PMID: 22869700
Jose D, Datta K, Johnson NP, von Hippel PH (2009) Spectroscopic studies of position-specific DNA "breathing" fluctuations at replication forks and primer-template junctions. Proc Natl Acad Sci U S A 106(11): 4231-4236. PMID: 19246398
Baase WA, Jose D, Ponedel BC, von Hippel PH, Johnson NP (2009) DNA models of trinucleotide frameshift deletions: the formation of loops and bulges at the primer-template junction. Nucleic Acids Research 37(5): 1682-1689. PMID: 1915527
Jose D, Porschke D (2005) The dynamics of the B-A transition of natural DNA double helices. J Am Chem Soc. 127(46): 16120-16128. PMID: 16287299
Jose D, Porschke D (2004) Dynamics of the B-A transition of DNA double helices. Nucleic Acids Research 32(7): 2251-2258. PMID: 15107493