The Kosenkov Group

Physical Chemistry at Monmouth University

Selected Publications

Journal Papers

1. Pradeep Gurunathan, Atanu Acharya, Debashree Ghosh, Dmytro Kosenkov, Ilya Kaliman, Yihan Shao, Anna Krylov, and Lyudmila Slipchenko „The Extension of the Effective Fragment Potential Method to Macromolecules“, J. Phys. Chem. B, 2016, 120(27), 6562-6574, DOI: 10.1021/acs.jpcb.6b04166
2. Dmytro Kosenkov, James Shaw, Jennifer Zuczek, and Yana Kholod „Transient Absorption Spectroscopy of Cis-Trans Isomerization of N,N-Dimethyl-4,4'-Azodianiline with 3D-Printed Temperature Controlled Sample Holder“, J. Chem. Educ., 2016, 93(7), 1299-1304, DOI: 10.1021/acs.jchemed.6b00121
3. Dmytro Kosenkov „PyFREC: Software for Förster Electronic Coupling Evaluation in Molecular Fragments“, J. Comp. Chem., 2016, 37(19), 1847-1854, DOI: 10.1002/jcc.24401
4. Nicole Famularo, Yana Kholod, and Dmytro Kosenkov „Integrating Chemistry Laboratory Instrumentation into the Industrial Internet: Building, Programming, and Experimenting with an Automatic Titrator“, J. Chem. Educ., 2016, 93(1), 175-181, DOI: 10.1021/acs.jchemed.5b00494
5. Gary Prato, Samantha Silvent, Sammy Saka, Massimiliano Lamberto, and Dmytro Kosenkov „Thermodynamics of Binding of Di- and Tetrasubstituted Naphthalene Diimide Ligands to DNA G-Quadruplex“, J. Phys. Chem. B, 2015, 119(8), 3335-3347, DOI: 10.1021/jp509637y
6. Y. Shao, Z. Gan, E. Epifanovsky, A. T. B. Gilbert, M. Wormit, J. Kussmann, A. W. Lange, A. Behn, J. Deng, X. Feng, D. Ghosh, M. Goldey, P. R. Horn, L. D. Jacobson, I. Kaliman, R. Z. Khaliullin, T. Kus, A. Landau, J. Liu, E. I. Proynov, Y. M. Rhee, R. M. Richard, M. A. Rohrdanz, R. P. Steele, E. J. Sundstrom, H. L. Woodcock III, P. M. Zimmerman, D. Zuev, B. Albrecht, E. Alguire, B. Austin, G. J. O. Beran, Y. A. Bernard, E. Berquist, K. Brandhorst, K. B. Bravaya, S. T. Brown, D. Casanova, C.-M. Chang, Y. Chen, S. H. Chien, K. D. Closser, D. L. Crittenden, M. Diedenhofen, R. A. DiStasio Jr., H. Do, A. D. Dutoi, R. G. Edgar, S. Fatehi, L. Fusti-Molnar, A. Ghysels, A. Golubeva-Zadorozhnaya, J. Gomes, M. W. D. Hanson-Heine, P. H. P. Harbach, A. W. Hauser, E. G. Hohenstein, Z. C. Holden, T.-C. Jagau, H. Ji, B. Kaduk, K. Khistyaev, J. Kim, J. Kim, R. A. King, P. Klunzinger, D. Kosenkov, T. Kowalczyk, C. M. Krauter, K. U. Lao, A. Laurent, K. V. Lawler, S. V. Levchenko, C. Y. Lin, F. Liu, E. Livshits, R. C. Lochan, A. Luenser, P. Manohar, S. F. Manzer, S.-P. Mao, N. Mardirossian, A. V. Marenich, S. A. Maurer, N. J. Mayhall, C. M. Oana, R. Olivares-Amaya, D. P. O'Neill, J. A. Parkhill, T. M. Perrine, R. Peverati, A. Prociuk, D. R. Rehn, E. Rosta, N. J. Russ, S. M. Sharada, S. Sharma, D. W. Small, A. Sodt, T. Stein, D. Stück, Y.-C. Su, A. J. W. Thom, T. Tsuchimochi, V. Vanovschi, L. Vogt, O. Vydrov, T. Wang, M. A. Watson, J. Wenzel, A. White, C. F. Williams, S. Yeganeh, S. R. Yost, Z.-Q. You, I. Y. Zhang, X. Zhang, Y. Zhao, B. R. Brooks, G. K. L. Chan, D. M. Chipman, C. J. Cramer, W. A. Goddard III, M. S. Gordon, W. J. Hehre, A. Klamt, H. F. Schaefer III, M. W. Schmidt, C. D. Sherrill, D. G. Truhlar, A. Warshel, X. Xuaf, A. Aspuru-Guzik, R. Baer, A. T. Bell, N. A. Besley, J.-D. Chai, A. Dreuw, B. D. Dunietz, T. R. Furlani, S. R. Gwaltney, C.-P. Hsu, Y. Jung, J. Kong, D. S. Lambrecht, W. Liang, C. Ochsenfeld, V. A. Rassolov, L. V. Slipchenko, J. E. Subotnik, T. Van Voorhis, J. M. Herbert, A. I. Krylov, P. M. W. Gill, and M. Head-Gordon „Advances in Molecular Quantum Chemistry Contained in the Q-Chem 4 Program Package“, Molecular Physics, 2015, 113(2), 184-215, DOI: 10.1080/00268976.2014.952696
7. Debashree Ghosh, Dmytro Kosenkov, Vitalii Vanovschi, Joanna Flick, Ilya Kaliman, Yihan Shao, Andrew T.B. Gilbert, Anna I. Krylov, Lyudmila V. Slipchenko „Effective fragment potential method in Q-CHEM: A guide for users and developers“, J. Comput. Chem., 2013, 34(12), 1060-1070, DOI: 10.1002/jcc.23223
8. Joanna C. Flick, Dmytro Kosenkov, Edward G. Hohenstein, C. David Sherrill, and Lyudmila V. Slipchenko „Accurate Prediction Of Non-Covalent Interaction Energies With The Effective Fragment Potential Method: Comparison Of Energy Components To Symmetry-Adapted Perturbation Theory For The S22 Test Set“, J. Chem. Theory Comput., 2012, 8(8), 2835-2843, DOI: 10.1021/ct200673a
9. Mikhail S. Baranov, Konstantin A. Lukyanov, Alexandra O. Borissova, Jordan Shamir, Dmytro Kosenkov, Lyudmila V. Slipchenko, Laren M. Tolbert, Ilia V. Yampolsky, Kyril M. Solntsev „Conformationally locked chromophores as a model of excited state proton transfer in fluorescent proteins“, J. Am. Chem. Soc., 2012, 134(13), 6025-6032, DOI: 10.1021/ja3010144
10. William H. James III, Evan G. Buchanan, Christian W. Müller, Jacob C. Dean, Dmytro Kosenkov, Lyudmila V. Slipchenko, Li Guo, Andrew G. Reidenbach, Samuel H. Gellman, and Timothy S. Zwier „Evolution of Amide Stacking in Larger γ-Peptides: Triamide H-Bonded Cycles“, J. Phys. Chem. A, 2011, 115(47), 13783-13798, DOI: 10.1021/jp205527e
11. Andrea Michalkova, Yana Kholod, Dmytro Kosenkov, Leonid Gorb, Jerzy Leszczynski „Origin of Life: Viability of Pyrite Pulled Metabolism in the "Iron-Sulfur World" Theory. Quantum Chemical Assessment“, Geochimica et Cosmochimica Acta, 2011, 75(7), 1933-1941, DOI: 10.1016/j.gca.2011.01.015
12. Dmytro Kosenkov, Lyudmila V. Slipchenko „Solvent Effects on the Electronic Transitions in p-Nitroaniline: QM/EFP Study“, J. Phys. Chem. A, 2010, 115(4), 392-401, DOI: 10.1021/jp110026c
13. Debashree Ghosh, Dmytro Kosenkov, Vitalii Vanovschi, Chris Williams, John Herbert, Mark Gordon, Michael Schmidt, Lyudmila Slipchenko and Anna I. Krylov „Non-covalent interactions in extended systems described by the Effective Fragment Potential method: Theory and application to nucleobase oligomers“, J. Phys. Chem. A, 2010, 114(48), 12739-12754, DOI: 10.1021/jp107557p
14. Tetyana Petrova, Igor Tarabara, Vitaliy Palchikov, Liliya Kasyan, Dmytro Kosenkov, Sergiy Okovytyy, Leonid Gorb, Svetlana Shishkina, Oleg Shishkin, and Jerzy Leszczynski „Ethanolysis of N-substituted Endic Imides: Discovery of Diverse Pathways Depending on Substituent's Character“, Org. Biomol. Chem., 2010, 8(9), 2142-2157, DOI: 10.1039/b917850c
15. Dmytro Kosenkov, Yana Kholod, Leonid Gorb, Oleg V. Shishkin, Gulnara Kuramshina, Galina I. Dovbeshko, and Jerzy Leszczynski „Effect of a pH Change on the Conformational Stability of the Modified Nucleotide Queuosine Monophosphate“, J. Phys. Chem. A, 2009, 113(33), 9386-9395, DOI: 10.1021/jp903993s
16. Dmytro Kosenkov, Yana Kholod, Leonid Gorb, Oleg Shishkin, Dmytro Hovorun, Michel Mons and Jerzy Leszczynski „Kinetic simulation of Gas Phase Experiments: Cytosine and Guanine Tautomerization“, J. Phys. Chem. B, 2009, 113(17), 6140-6150, DOI: 10.1021/jp810570w
17. Michalkova, D. Kosenkov, L. Gorb, J. Leszczynski „Thermodynamics and Kinetics of Intramolecular Water Assisted Proton Transfer in Na+-1-Methylcytosine Water Complexes“, J. Phys. Chem. B, 2008, 112(29), 8624-8633, DOI: 10.1021/jp801807x
18. Yana Kholod, Dmytro Kosenkov, Sergiy Okovytyy, Leonid Gorb, Mohammad Qasim, and Jerzy Leszczynski „CL-20 Photodecomposition: Ab Initio Foundations for Identification of Products“, Spectrochimica Acta A: Molecular and Biomolecular Spectroscopy, 2008, 71(1), 230-237, DOI: 10.1016/j.saa.2007.12.021
19. Dmytro Kosenkov, Leonid Gorb, Oleg V. Shishkin, Jirí Šponer and Jerzy Leszczynski „Tautomeric Equlibrium, Stability and Hydrogen Bonding in 2'-Deoxyguanosine-Monophosphate Complexed with Mg2+“, J. Phys. Chem. B., 2008, 112(1), 150-157, DOI: 10.1021/jp075888t
20. Galina Dovbeshko, Olena Fesenko, Vladimir Chegel, Yuriy Shirshov, Dmitry Kosenkov, and Anna Nazarova „Effect of Nanostructured Gold Surface on the SEIRA Spectra of Nucleic Acid, Albumin, α-Glycine and Guanine“, Asian Chem. Lett., 2006, 10(1-2), 33-34 (On occasion of the seventy fifth birthday of Professor Georg Zundel) Full text: PDF
21. G.I. Dovbeshko, O.P. Gnatyuk, V.I. Chegel, Y.M. Shirshov, D.V. Kosenkov, E.A. Andreev, H.A.  Tajmir-Riahi, P.M. Lytvyn „Gold and colloidal gold surface influence on DNA conformational change“, Semiconductor Physics, Quantum Electronics and Optoelectronics, 2004, 7(3), 318-325 Full text: PDF
22. Olena P. Repnytska, Galina I. Dovbeshko, Volodymyr P. Tryndiak, Igor M. Todor and Dmitriy V. Kosenkov „Structural organisation of nucleic acids from tumour cells“, Faraday Discuss., 2003, 126, 61-76, DOI: 10.1039/b304904c

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Chapters in Books

1. Dmytro Kosenkov, Yana Kholod, Leonid Gorb, and Jerzy Leszczynski, „Chapter 7 Evaluation of Proton Transfer in DNA Constituents: Development and Application of Ab Initio Based Reaction Kinetics“, Kinetics and Dynamics From Nano- to Bio-Scale“ Series: „Challenges and Advances in Computational Chemistry and Physics, edited by Piotr Paneth, Agnieszka Dybala-Defratyka, Springer Netherlands, 2010, 187-211, ISBN: 978-90-481-3033-7, DOI: 10.1007/978-90-481-3034-4_7
2. G.I. Dovbeshko, O.P. Paschuk, O.M. Fesenko, V.I. Chegel, Yu.M. Shirshov, A.A. Nasarova, D.V. Kosenkov, „Biological Molecule Conformations Probed and Enhanced by Metal and Carbon Nanostructures: SEIRA, AFM and SPR Data“, Frontiers of Multifunctional Integrated Nanosystems NATO Science Series II: Mathematics, Physics and Chemistry Volume 152, edited by E. Buzaneva, P. Scharff, Kluwer Academic Publishers, 2005, 447-466, ISBN:1402021720, DOI: 10.1007/1-4020-2173-9_38
3. G. Dovbeshko, O. Repnytska, T. Pererva, A. Miruta, D. Kosenkov, „Vibrational spectroscopy and principal component analysis for conformational study of virus nucleic acids“, Proceedings of SPIE, edited by Ed. S.Sveshnikov, S. Kostyukevich., SPIE, 2004, 309-316, DOI: 10.1117/12.570000

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Patents

1. Dmytro Kosenkov and Yana Kholod, U.S. Provisional Patent Application. No. 62/307,111 entitled „System for Automatic In-field Collection of Physico-Chemical Parameters for Water Quality Assessment“, filed on March 11, 2016

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Conference Presentations

1. Dmytro Kosenkov „Exciton Energy Transfer in Light Harvesting Proteins with Covalently Bound Pigments: The Role of Molecular Vibrations“, The 22nd Annual Cottrell Scholar Conference, July 13-15, 2016, Westin La Paloma, AZ
2. Katlynn Muratore, Erin Hoag, and Dmytro Kosenkov „Evaluation of Selectivity of Binding of Diminazene and its Alkyne Analogs to DNA“, The 15th Annual Mercury Conference on Undergraduate Computational Chemistry, July 21-23, 2016, Bucknell University, Lewisburg, PA
3. Dmytro Kosenkov and Yana Kholod „Analysis of Electronic Couplings in Photosynthetic Proteins“, 44thMiddle Atlantic Regional Meeting (MARM) - American Chemical Society, June 9-12, 2016, College of Mount Saint Vincent, Riverdale, NY
4. Crystal Diaz, Pedram Daneshgar, and Dmytro Kosenkov „Collection and Analysis of Physico-Chemical Parameters of Water for Assessment of Intertidal Coastal Ecosystems“, New Jersey Water Environment Association (NJWEA) 101th Annual Meeting, May 16-20, 2016, Atlantic City, NJ
5. Dmytro Kosenkov „Efficient Evaluation of Electronic Couplings in Complex Molecular Systems“, Pavanello Theoretical Chemistry Group Meeting, Department of Chemistry, May 10, 2016, Rutgers University, Newark NJ
6. Jennifer Zuczek, Jessica Howe, James Shaw, and Dmytro Kosenkov „Analysis of Electronic Excited States of Solvatochromic Dyes in Solvents of Varying Polarity“, The 15th Annual Student Research Conference, April 19, 2016, Monmouth University, West Long Branch, NJ
7. Brittany Reed, Michael DeFilippo, Danielle Valdez, and Dmytro Kosenkov „Exciton Energy Transfer in Light Harvesting Proteins with Covalently Bound Pigments: The Role of Electronic Coupling“, The 15th Annual Student Research Conference, April 19, 2016, Monmouth University, West Long Branch, NJ
8. Erin Hoag, Katlynn Muratore, Crystal Diaz, Marie Furda, Massimiliano Lamberto, and Dmytro Kosenkov „Modeling Selectivity of Binding of Polycyclic Aromatic Ligands to DNA“, The 15th Annual Student Research Conference, April 19, 2016, Monmouth University, West Long Branch, NJ
9. Crystal Diaz, Pedram Daneshgar, and Dmytro Kosenkov „Collection and Analysis of Physico-Chemical Parameters of Water for Assessment of Intertidal Coastal Ecosystems“, The 15th Annual Student Research Conference, April 19, 2016, Monmouth University, West Long Branch, NJ
10. Erin Hoag, Katlynn Muratore, Crystal Diaz, Marie Furda, Massimiliano Lamberto, and Dmytro Kosenkov „Assessment of Anti-Cancer Drug Toxicity by Modeling Selectivity of Organic Ligands Binding to DNA“, 10th Annual Undergraduate Research Symposium in the Biological and Chemical Sciences at William Paterson University, April 9, 2016, Wayne, NJ
11. Dmytro Kosenkov and Yana Kholod „Exciton Couplings in Complex Molecular Systems: A Computational Implementation“, 251th ACS National Meeting & Exposition, March 13-17, 2016, San Diego, CA
12. Dmytro Kosenkov, Nicole Famularo, and Yana Kholod „Integration chemistry laboratory instrumentation into the industrial Internet“, 251th ACS National Meeting & Exposition, March 13-17, 2016, San Diego, CA
13. Jennifer Zuczek, James Shaw, and Dmytro Kosenkov „Electronic excitations in Reichardt’s and Brooker’s solvatochromic dyes in solvents of varying polarity“, 251th ACS National Meeting & Exposition, March 13-17, 2016, San Diego, CA
14. James Shaw, Jennifer Zuczek, DmytroKosenkov, and Yana Kholod „Transient Absorption Spectroscopy of Cis-Trans Isomerization of N, N-Dimethyl-4, 4’-Azodianiline with 3D-Printed Temperature Controlled Sample Holder“, Independent College Fund of New Jersey (ICFNJ) 2014-2015 Undergraduate Research Symposium, p. 24, March 7, 2016, Jersey City, NJ
15. James Shaw, Jennifer Zuczek, Amir Eldin, and Dmytro Kosenkov „Analysis of Electronic Excited States of ET(30) Dye in Solvents of Varying Polarity“, 7th Annual Summer Research Symposium, August 13, 2015, Monmouth University, West Long Branch, NJ
16. Brittany Reed and Dmytro Kosenkov „Excitation Energy Transfer in Phycoerythrin 545 Light-Harvesting Complex“, 7th Annual Summer Research Symposium, August 13, 2015, Monmouth University, West Long Branch, NJ
17. Dmytro Kosenkov and Yana Kholod „Dynamics of Electronic Excitations in Complex Molecular Systems: A Computational Implementation“, Northeast Regional Meeting (NERM) - American Chemical Society, June 10-13, 2015, Ithaca College, Ithaca, NY
18. Rylee McBride and Dmytro Kosenkov „Conformational Dynamics of a Molecular Diazo Photoswitch“, NJ-ACS (North Jersey Section - American Chemical Society) the 67th Annual Undergraduate Research Conference, April 24, 2015, Fairleigh Dickinson University, Madison, NJ
19. Rylee McBride and Dmytro Kosenkov „Analysis of the Kinetics of Congo Red Dye as a Photoswitchable Molecule“, The 26th Annual Saint Joseph's University Sigma Xi Student Research Symposium, April 17, 2015, Saint Joseph's University, Philadelphia, PA
20. Michael DeFilippo, Katlynn Muratore, Danielle Valdez, and Dmytro Kosenkov „Energy Transfer in Biological Chromophores“, The 26th Annual Saint Joseph's University Sigma Xi Student Research Symposium, April 17, 2015, Saint Joseph's University, Philadelphia, PA
21. James Shaw, Amir Eldin, and Dmytro Kosenkov „Analysis of Electronic Excited States of Reichardt's ET(30) Dye in Solvents of Varying Polarity“, 9th Annual Undergraduate Research Symposium in the Biological and Chemical Sciences at William Paterson University, April 11, 2015, Wayne, NJ
22. Erin Hoag, Sammy Saka, Massimiliano Lamberto, and Dmytro Kosenkov „Assessment of Anti-Cancer Drug Toxicity by Modeling Selectivity of Organic Ligands Binding to DNA“, Independent College Fund of New Jersey (ICFNJ) 2014-2015 Undergraduate Research Symposium, p. 27, March 30, 2015, Jersey City, NJ
23. Nicole Famularo and Dmytro Kosenkov „Integration of Chemistry Laboratory Instrumentation into the Industrial Internet“, Independent College Fund of New Jersey (ICFNJ) 2014-2015 Undergraduate Research Symposium, p. 12, March 30, 2015, Jersey City, NJ
24. Dmytro Kosenkov „Modeling non-covalent interactions in biomolecules: An ab initio based fragmentation approach“, 249th ACS National Meeting & Exposition, March 22-26, 2015, Denver, CO
25. Kevin Wioland and Dmytro Kosenkov „Excited State Decomposition Analysis of Organic Chromophores“, 6th Annual Summer Research Symposium, August 14, 2014, Monmouth University, West Long Branch, NJ
26. Sammy Saka, Gary Prato, Samantha Silvent , Massimiliano Lamberto, and Dmytro Kosenkov „Molecular Dynamic Simulations of DNA-Ligand Complexes“, 6th Annual Summer Research Symposium, August 14, 2014, Monmouth University, West Long Branch, NJ
27. Kristen Flynn, Erik Braunstein, Philip Donahue, and Dmytro Kosenkov „Extended Hückel approach for modeling electronic excitations in peridinin-chlorophyll protein complex“, 248th ACS National Meeting & Exposition, August 10-14, 2014, San Francisco, CA
28. Sammy Saka, Gary Prato, Samantha Silvent, Massimiliano Lamberto and Dmytro Kosenkov „Thermodynamics of Naphthalene Diimide Derived Ligand Binding to G-Quadruplex“, The 13th Annual Mercury Conference on Undergraduate Computational Chemistry, July 24-26, 2014, Bucknell University, Lewisburg, PA
29. Omkaran Menon, Gregory Moehring, and Dmytro Kosenkov „Natural Bond Orbital Analysis of Pentahydrido-3-Methylpyridine-Bis(Triphenylphosphine)Rhenium(V)“, The 13th Annual Student Research Conference, April 16, 2014, Monmouth University, West Long Branch, NJ
30. Kevin Wioland and Dmytro Kosenkov „Theoretical Study of Mechanisms of Solvatochromic Shifts in Solvents of Varying Polarity“, The 13th Annual Student Research Conference, April 16, 2014, Monmouth University, West Long Branch, NJ
31. Nicole Famularo, Daniel Chang, and Dmytro Kosenkov „Designing the Next Generation of the Environmentally Friendly Dye-Sensitized Solar Cells“, The 13th Annual Student Research Conference, April 16, 2014, Monmouth University, West Long Branch, NJ
32. Kristen Flynn, Erik Braunstein, Philip Donahue, and Dmytro Kosenkov „An Extended Hückel Approach for Modeling Electronic Excited States in Light Harvesting Complexes“, The 13th Annual Student Research Conference, April 16, 2014, Monmouth University, West Long Branch, NJ
33. Sammy Saka, Gary Prato, and Samantha Silvent, Massimiliano Lamberto and Dmytro Kosenkov „Computational Examination of G-Quadruplex Thermodynamic Stabilization Through Ligand Binding“, The 13th Annual Student Research Conference, April 16, 2014, Monmouth University, West Long Branch, NJ
34. Omkaran Menon, Gregory Moehring, and Dmytro Kosenkov „Natural Bond Orbital Analysis of Eight-Coordinate Rhenium Complexes“, The 25th Annual Saint Joseph's University Sigma Xi Student Research Symposium, April 12, 2014, Saint Joseph's University, Philadelphia, PA
35. Kevin Wioland and Dmytro Kosenkov „Theoretical Study of Mechanisms of Solvatochromic Shifts in Solvents of Varying Polarity“, The 25th Annual Saint Joseph's University Sigma Xi Student Research Symposium, April 12, 2014, Saint Joseph's University, Philadelphia, PA
36. Kristen Flynn, Erik Braunstein, Philip Donahue, and Dmytro Kosenkov „An Extended Hückel Approach for Modeling Electronic Excitations in Peridinin-Chlorophyll Protein Complex“, The 25th Annual Saint Joseph's University Sigma Xi Student Research Symposium, April 12, 2014, Saint Joseph's University, Philadelphia, PA
37. Nicole Famularo, Daniel Chang, and Dmytro Kosenkov „Designing the Next Generation of the Environmentally Friendly Dye-Sensitized Solar Cells“, The 25th Annual Saint Joseph's University Sigma Xi Student Research Symposium, April 12, 2014, Saint Joseph's University, Philadelphia, PA
38. Samantha Silvent, Gary Prato, Sammy Saka, Massimiliano Lamberto and Dmytro Kosenkov „Fragment Molecular Orbital Theory: Estimation of Binding Energies of G-quadruplex Stabilizing Ligands“, The 25th Annual Saint Joseph's University Sigma Xi Student Research Symposium, April 12, 2014, Saint Joseph's University, Philadelphia, PA
39. Samantha Silvent, Gary Prato, Massimiliano Lamberto, and Dmytro Kosenkov „Modeling of DNA Binding of Naphthalene Diimide Derived Potential Anticancer Drugs: A Quantum Mechanical Perspective“, Independent College Fund of New Jersey (ICFNJ) 2013-2014 Undergraduate Research Symposium, p. 19, March 24, 2014, Jersey City, NJ
40. Dmytro Kosenkov „A Role of Non-covalent Interactions and Solvent Effects in Structure and Photochemistry of Biomolecules“, 22nd Conference on Current Trends in Computational Chemistry, November 15-16, 2013, Jackson, MS
41. Gary Prato, Samantha Silvent, Massimiliano Lamberto, and Dmytro Kosenkov „Rational Anti-Cancer Drug Design: Binding of N-Methyl-Piperazine Functionalized Naphthalene Diimides to DNA G-Quadruplex“, 22nd Conference on Current Trends in Computational Chemistry, November 15-16, 2013, Jackson, MS
42. Gary Mejia, Adit Patel, Vivek Patel, Heather Siebert, Omkaran Menon, Sana Rashid, Harpreet Sodhi, Dmytro Kosenkov, Gregory A Moehring „Pseudorotational rearrangements of seven- or eight-coordinate rhenium centers supported by a nitrogen-donor ligand “, 246th ACS National Meeting & Exposition, September 8-12, 2013, Indianapolis, IN
43. Samantha Silvent, Gary Prato, Massimiliano Lamberto, and Dmytro Kosenkov „DNA G-quadruplex binding of naphthalene diimide derived potential anticancer drugs: A computational study“, 246th ACS National Meeting & Exposition, September 8-12, 2013, Indianapolis, IN
44. Samantha Silvent, Gary Prato, Massimiliano Lamberto, and Dmytro Kosenkov „Computational Investigation of a Di-Dentate Naphthalene Diimide Potential Anti-Cancer Drug“, 5th Annual Summer Research Symposium, August 13, 2013, Monmouth University, West Long Branch, NJ
45. Scott Nicholson and Dmytro Kosenkov „Designing Next Generation Solar Cells: Modelling Energy Transfer in Fluorescent Dyes and Chlorophyll Derivatives“, 5th Annual Summer Research Symposium, August 13, 2013, Monmouth University, West Long Branch, NJ
46. Erik Braunstein, Scott Anton, Anthony Cappadona, Daniel Chang, and Dmytro Kosenkov „Electronic Excitations in Chlorophyll-Carotenoid Complexes“, The 24th Annual Saint Joseph's University Sigma Xi Student Research Symposium, p. 13, April 19, 2013, Saint Joseph's University, Philadelphia, PA
47. Kevin Wioland, Massimiliano Lamberto, and Dmytro Kosenkov „Solvent Effects on the Electronic Transitions in Viologens: A Computational Study“, The 24th Annual Saint Joseph's University Sigma Xi Student Research Symposium, p. 13, April 19, 2013, Saint Joseph's University, Philadelphia, PA
48. Omkaran Menon, Gregory Moehring, and Dmytro Kosenkov „Modeling the Thermochemistry of Isomerization of Eight-Coordinate Rhenium Complexes “, The 24th Annual Saint Joseph's University Sigma Xi Student Research Symposium, p. 22, April 19, 2013, Saint Joseph's University, Philadelphia, PA
49. Samantha Silvent, Gary Prato, Massimiliano Lamberto, and Dmytro Kosenkov „Modeling of DNA binding of Naphthalene Diimide Derived Potential Anti-Cancer Drugs“, The 24th Annual Saint Joseph's University Sigma Xi Student Research Symposium, p. 20, April 19, 2013, Saint Joseph's University, Philadelphia, PA
50. Erik Braunstein, Scott Anton, Anthony Cappadona, Daniel Chang, and Dmytro Kosenkov „Towards the Design of Solar Cells: Modeling of Peridinin-Chlorophyll Protein Chromophores “, The 12th Annual Student Research Conference, April 17, 2013, Monmouth University, West Long Branch, NJ
51. Kevin Wioland, Massimiliano Lamberto, and Dmytro Kosenkov „Theoretical Treatment of Solvent Effects on the Electronic Transitions in Viologens“, The 12th Annual Student Research Conference, April 17, 2013, Monmouth University, West Long Branch, NJ
52. Omkaran Menon, Gregory Moehring, and Dmytro Kosenkov „Modeling of Thermochemical Isomerization in Eight-Coordinate Rhenium Complexes“, The 12th Annual Student Research Conference, April 17, 2013, Monmouth University, West Long Branch, NJ
53. Samantha Silvent, Gary Prato, Massimiliano Lamberto, and Dymtro Kosenkov „Molecular Modeling of DNA Binding Potential Anti-Cancer Drug: Napthaline Diimide“, The 12th Annual Student Research Conference, April 17, 2013, Monmouth University, West Long Branch, NJ
54. Dmytro Kosenkov and Lyudmila V. Slipchenko „Excitation Energy Transfer in Peridinin-Chlorophyll-Protein“, 242nd ACS National Meeting & Exposition August 28 - September 1, 2011, Denver, CO
55. Dmytro Kosenkov and Lyudmila V. Slipchenko „First-Principles Based Modeling of Molecular Electronic Excitations in Biological Systems“, 240th ACS National Meeting & Exposition, August 22-26, 2010, Boston, MA
56. Dmytro Kosenkov and Lyudmila V. Slipchenko „Electronic Excitations in Solution: First-Principles Based QM/MM Study“, 240th ACS National Meeting & Exposition, August 22-26, 2010, Boston, MA
57. Dmytro Kosenkov and Lyudmila V. Slipchenko „A Combined Quantum Mechanics/Molecular Dynamics Simulation of Solvatochromic Shifts in Organic Chromophore p-Nitroaniline“, Gordon Research Conference on Atomic & Molecular Interactions, July 18-23, 2010, Colby-Sawyer College in New London, NH
58. Dmytro Kosenkov and Lyudmila V. Slipchenko „Solvent Effects on the Electronic Transitions in p-Nitroaniline: A Combined Quantum Mechanics/Molecular Dynamics Simulation“, 2010 Midwest Thermodynamics and Statistical Mechanics Conference, June 2-3, 2010, University of Notre Dame, IN
59. Dmytro Kosenkov and Lyudmila V. Slipchenko „QM/MM Simulations of UV Spectra of p-Nitroaniline in Organic Solvents“, Molecular Quantum Mechanics, an International Conference in Honor of Professor Henry F. Schaefer III, May 24-29, 2010, University of California, Berkeley, CA
60. Dmytro Kosenkov and Lyudmila V. Slipchenko „Solvent Effects on the Electronic Transitions in p-Nitroaniline: QM/MM Study“, 42nd Midwest Theoretical Chemistry Conference, May 20-22, 2010, Purdue University, West Lafayette, IN
61. Dmytro Kosenkov, Vitalii Vanovschi, Debashree Ghosh, Anna I. Krylov, Lyudmila V. Slipchenko „Implementation of the Effective Fragment Potential (EFP) method in Q-Chem“, Q-Chem Workshop, December 10-11, 2009, University of California, Berkeley, CA
62. Dmytro Kosenkov, Leonid Gorb, and Jerzy Leszczynski „Developing a Kinetic Model of Experiments on Isolated DNA Constituents“, Gordon Research Conference on Biological Molecules in the Gas Phase and in Solution, July 5-10, 2009, Tilton, NH
63. Dmytro Kosenkov, Leonid Gorb, and Jerzy Leszczynski „Kinetic Simulation of Gas Phase Experiments on Nucleobases“, 237th ACS National Meeting & Exposition March, March 22-26, 2009, Salt Lake City, UT
64. Dmytro Kosenkov, Yana Kholod, Leonid Gorb and Jerzy Leszczynski „Does Queuosine Nucleotide Exist in Zwitterionic Form?“, Mississippi Academy of Sciences, Annual Meeting, February 26-27, 2009, Olive Branch, MS
65. Dmytro Kosenkov „Nucleobases, Nucleotides, Nucleic Acids: Ab-Initio and Kinetic Simulations“, Professor Mark Gordon Group Meeting, Department of Chemistry, Iowa State University, July 2, 2010, Ames, IA
66. Dmytro Kosenkov, Yana Kholod, Leonid Gorb, Mohammad Qasim and Jerzy Leszczynski „Thermal Decomposition of RDX, HMX and CL-20: Kinetic Study“, 8th Southern School on Computational Chemistry, April 25-26, 2008, Jackson, MS
67. Dmytro Kosenkov „Why DNA is a Good Storage for Genetic Information: Quantum Chemical Investigation“, Theory Group Meeting, Department of Chemistry, April 3, 2008, University of Washington, Seattle, WA
68. Dmytro Kosenkov, Yana Kholod, Leonid Gorb and Jerzy Leszczynski „Modeling of Space-Time Distribution of Multi-Component Reacting System. Implication for Prebiotic Evolution“, 16th Conference on Current Trends in Computational Chemistry, November 2-3, 2007, Jackson, MS
69. Dmytro Kosenkov, Leonid Gorb and Jerzy Leszczynski „Kinetic Simulation of Guanine Desorption in Gas-Phase Experiments“, 7th Southern School on Computational Chemistry, April 6-7, 2007, Jackson, MS
70. Dmytro Kosenkov, Leonid Gorb, and Jerzy Leszczynski „Resonance-Enhanced Two-Photon Ionization Technique: Computer Simulation“, 15th Conference on Current Trends in Computational Chemistry, November 3-4, 2006, Jackson, MS
71. Dmytro Kosenkov, Leonid Gorb, Oleg V. Shishkin and Jerzy Leszczynski „Kinetic Model of Cytosine Bimolecular Tautomerization“, 6th Southern School on Computational Chemistry, April 7-8, 2006, Jackson, MS
72. Dmytro Kosenkov, Leonid Gorb, Yevgeniy Podolyan and Jerzy Leszczynski „Tautomeric Transitions in 2'-Deoxy-Guanosine-Monophosphate“, 14th Conference on Current Trends in Computational Chemistry, November 12-13, 2005, Jackson, MS
73. Dmytro Kosenkov, Galina I. Dovbeshko, Oleg V. Shishkin, Leond Gorb, Jerzy Leszczynski, Roman I. Zubatyuk „Molecular Structure of β-D-glucosylhydroxymethyluracil: a DFT Investigation“, 1st International Symposium on Methods and Applications of Computational Chemistry 30 June – 1 July, 2005, Kharkiv, Ukraine

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